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configuration

Config Objects​

class Config()

Object with information about model defaults which are used throughout the package:

  • TOTAL_PROTEIN_CONSTRAINT_ID: str, TotalProteinConstraint
  • P_TOT_DEFAULT: float, 0.258 g_p/g_cdw
  • CO2_EXHANGE_RXNID: str, EX_co2_e
  • GLUCOSE_EXCHANGE_RXNID: str, EX_glc__D_e
  • BIOMASS_REACTION: str, BIOMASS_Ec_iML1515_core_75p37M
  • OXYGEN_UPTAKE_RXNID: str, EX_o2_e
  • ACETATE_EXCRETION_RXNID: str, EX_ac_e
  • PHYS_RXN_IDS: List of str, [BIOMASS_REACTION, GLUCOSE_EXCHANGE_RXNID, ACETATE_EXCRETION_RXNID, CO2_EXHANGE_RXNID, OXYGEN_UPTAKE_RXNID, 'PGI', 'G6PDH2r', 'EDA', 'CS', 'ICL', 'PPC', 'ME1', 'ME2']

Defaults are configured for the iML1515 E.coli model

P_TOT_DEFAULT​

g_protein/g_cdw

reset​

def reset()

Reset the config object to the standard settings for E.coli iML1515.